PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143932001
Common NameGSBRNA2T00143932001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 449aa    MW: 50068.3 Da    PI: 9.7134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143932001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-067193123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F+r  nL+ H r H
  GSBRNA2T00143932001 71 FICEICNKGFKRDQNLQLHRRGH 93
                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.83E-87093No hitNo description
Gene3DG3DSA:3.30.160.605.2E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0117193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8667193IPR007087Zinc finger, C2H2
PfamPF121711.6E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM0035593113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.83E-8143168No hitNo description
SMARTSM00355190148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MIIPDDPHLL SFPSYVLHQE HITPNPNPNP NPTASKSNKR KRNLPGNPGM YNPDAEVIAL  60
SPNSLMTTNR FICEICNKGF KRDQNLQLHR RGHNLPWKLK QRTDKEQVKK KVYICPENTC  120
VHHDPGRALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVV SDWKAHSKIC GTREYRCDCG  180
TLFSRKDSFI THRAFCDALA EESARFASLP PAAAAYLNNS SDAEVNLGNI KPNHQQRLLD  240
CTSSQLDRHD FNVNRNNING FTGQSSTNQL PLAANVFASS SSPSPHSASA LLQNLWQLQG  300
QSYQQLLLNK NNNNIIQSGM PNNQEDHDTI KRELVINGSL FSSEARTSYN QNGGQEIASM  360
SATALLQMAA QMGSKRSSSS SNNGMAFGLM TSSIFNNKEM ENKIKTKEVD ERGFTRDFLG  420
EGSQNRPRPI LMVNHNLPTT TTAHQPPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143932001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641314.10.0PREDICTED: protein indeterminate-domain 9-like
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A078D9S80.0A0A078D9S8_BRANA; BnaC03g55250D protein
STRINGBra038293.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-174C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]